Function reference • pgrm

All functions

PGRM_ALL: The phenotype genotype referene map (PGRM)

annotate_results(): Annotate a result set with the PGRM

benchmark_results: Summary statistics from all five test cohorts with annotations

get_AER(): Calculate the acual:expected ratio (A:E) of a test cohort

get_PGRM(): Get instance of PGRM

get_RR(): Calculate the replicaiton rate (RR) of a test cohort

get_powered_rate(): Calculate the percent of associations that are powered in a test set

results_BBJ: Summary statistics from BioBank Japan (BBJ)

results_BioVU_AFR: Summary statistics from the African ancestery cohort in BioVU

results_BioVU_EUR: Summary statistics from the European ancestery cohort in BioVU

results_MGI: Summary statistics from the Michigan Genomics Initiative (MGI)

results_UKBB: Summary statistics from UK Biobank (UKBB)